IL_5K0Y_090

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_090 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2251

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

5K0Y|1|A|C|1737
5K0Y|1|A|G|1738
5K0Y|1|A|G|1739
5K0Y|1|A|A|1740
5K0Y|1|A|U|1741
*
5K0Y|1|A|A|1782
5K0Y|1|A|G|1783
5K0Y|1|A|A|1784
5K0Y|1|A|A|1785
5K0Y|1|A|G|1786

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain o

40S ribosomal protein S8

Chain q

40S ribosomal protein S6