IL_5K0Y_098

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

5K0Y|1|A|A|658

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5K0Y_098 not in the Motif Atlas

Homologous match to IL_8P9A_405

Geometric discrepancy: 0.1255

The information below is about IL_8P9A_405

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

5K0Y|1|A|G|655
5K0Y|1|A|U|656
5K0Y|1|A|U|657
5K0Y|1|A|A|658
5K0Y|1|A|A|659
5K0Y|1|A|A|660
5K0Y|1|A|A|661
*
5K0Y|1|A|U|1157
5K0Y|1|A|C|1158

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain Q

ribosomal protein uS12

Chain c

ribosomal protein uS5

Chain k

ribosomal protein eS26