IL_5K0Y_100
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_100 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2939
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
5K0Y|1|A|C|1094
5K0Y|1|A|G|1095
5K0Y|1|A|A|1096
5K0Y|1|A|U|1097
5K0Y|1|A|G|1098
5K0Y|1|A|C|1099
*
5K0Y|1|A|G|1125
5K0Y|1|A|G|1126
5K0Y|1|A|G|1127
5K0Y|1|A|C|1128
5K0Y|1|A|A|1129
5K0Y|1|A|G|1130
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain Y
- 40S ribosomal protein S27
- Chain Z
- ribosomal protein uS15
- Chain e
- ribosomal protein eS17
- Chain f
- ribosomal protein uS2
- Chain i
- ribosomal protein eS1
- Chain k
- ribosomal protein eS26
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