IL_5K0Y_102
3D structure
- PDB id
- 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 5K0Y|1|A|G|1281
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5K0Y_102 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3562
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
5K0Y|1|A|G|1277
5K0Y|1|A|A|1278
5K0Y|1|A|C|1279
5K0Y|1|A|A|1280
5K0Y|1|A|G|1281
5K0Y|1|A|G|1282
5K0Y|1|A|A|1283
5K0Y|1|A|U|1284
5K0Y|1|A|U|1285
5K0Y|1|A|G|1286
*
5K0Y|1|A|C|1305
5K0Y|1|A|U|1306
5K0Y|1|A|C|1307
5K0Y|1|A|G|1308
5K0Y|1|A|A|1309
5K0Y|1|A|U|1310
5K0Y|1|A|U|1311
5K0Y|1|A|C|1312
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain J
- ribosomal protein uS14
- Chain p
- ribosomal protein eS31
- Chain r
- 40S ribosomal protein S12
- Chain t
- ribosomal protein eS10
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