IL_5KCR_016

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5KCR|1|1A|G|801, 5KCR|1|1A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_016 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0554

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|G|674
5KCR|1|1A|A|675
5KCR|1|1A|A|676
5KCR|1|1A|A|677
5KCR|1|1A|C|678
*
5KCR|1|1A|G|799
5KCR|1|1A|A|800
5KCR|1|1A|G|801
5KCR|1|1A|A|802
5KCR|1|1A|U|803
5KCR|1|1A|A|804
5KCR|1|1A|G|805
5KCR|1|1A|C|806

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1P

50S ribosomal protein L15