IL_5KCR_031

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

5KCR|1|1A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_031 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.3343

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5KCR|1|1A|G|880
5KCR|1|1A|G|881
5KCR|1|1A|G|882
*
5KCR|1|1A|U|894
5KCR|1|1A|U|895
5KCR|1|1A|A|896
5KCR|1|1A|C|897

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1x

Transfer RNA; tRNA