IL_5KCR_045

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5KCR|1|1A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0678

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5KCR|1|1A|C|1208
5KCR|1|1A|U|1209
5KCR|1|1A|G|1210
5KCR|1|1A|C|1211
5KCR|1|1A|G|1212
5KCR|1|1A|A|1213
5KCR|1|1A|A|1214
5KCR|1|1A|G|1215
*
5KCR|1|1A|U|1234
5KCR|1|1A|G|1235
5KCR|1|1A|G|1236
5KCR|1|1A|A|1237
5KCR|1|1A|G|1238

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1U

50S ribosomal protein L20