IL_5KCR_086

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

5KCR|1|1A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_086 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.0983

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

5KCR|1|1A|G|2124
5KCR|1|1A|G|2125
5KCR|1|1A|A|2126
5KCR|1|1A|G|2127
5KCR|1|1A|G|2128
*
5KCR|1|1A|C|2160
5KCR|1|1A|C|2161
5KCR|1|1A|G|2162
5KCR|1|1A|A|2163
5KCR|1|1A|C|2164
5KCR|1|1A|C|2165
5KCR|1|1A|U|2166
5KCR|1|1A|U|2167
5KCR|1|1A|G|2168
5KCR|1|1A|A|2169
5KCR|1|1A|A|2170
5KCR|1|1A|A|2171
5KCR|1|1A|U|2172
5KCR|1|1A|A|2173
5KCR|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains