IL_5KCR_097

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5KCR|1|1A|G|2576, 5KCR|1|1A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_097 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0539

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5KCR|1|1A|C|2510
5KCR|1|1A|U|2511
5KCR|1|1A|C|2512
*
5KCR|1|1A|G|2574
5KCR|1|1A|C|2575
5KCR|1|1A|G|2576
5KCR|1|1A|A|2577
5KCR|1|1A|G|2578

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3