IL_5KCR_107

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_107 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0425

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KCR|1|1A|G|2737
5KCR|1|1A|A|2738
5KCR|1|1A|U|2739
5KCR|1|1A|A|2740
5KCR|1|1A|A|2741
5KCR|1|1A|G|2742
*
5KCR|1|1A|C|2762
5KCR|1|1A|G|2763
5KCR|1|1A|A|2764
5KCR|1|1A|A|2765
5KCR|1|1A|A|2766
5KCR|1|1A|C|2767

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13