IL_5KCR_121

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

5KCR|1|1a|G|64, 5KCR|1|1a|A|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_121 not in the Motif Atlas

Homologous match to IL_4LFB_005

Geometric discrepancy: 0.1473

The information below is about IL_4LFB_005

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

5KCR|1|1a|C|63
5KCR|1|1a|G|64
5KCR|1|1a|A|65
5KCR|1|1a|A|66
*
5KCR|1|1a|U|103
5KCR|1|1a|G|104

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20