IL_5KCR_128

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5KCR|1|1a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_128 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1006

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5KCR|1|1a|G|147
5KCR|1|1a|G|148
5KCR|1|1a|A|149
5KCR|1|1a|U|150
5KCR|1|1a|A|151
5KCR|1|1a|A|152
5KCR|1|1a|C|153
*
5KCR|1|1a|G|168
5KCR|1|1a|C|169
5KCR|1|1a|U|170
5KCR|1|1a|A|171
5KCR|1|1a|A|172
5KCR|1|1a|U|173
5KCR|1|1a|A|174
5KCR|1|1a|C|175

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20