IL_5KCR_139

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_139 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.5041

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5KCR|1|1a|G|450
5KCR|1|1a|A|451
5KCR|1|1a|A|452
5KCR|1|1a|G|453
5KCR|1|1a|G|454
5KCR|1|1a|G|455
*
5KCR|1|1a|C|477
5KCR|1|1a|A|478
5KCR|1|1a|U|479
5KCR|1|1a|U|480
5KCR|1|1a|G|481
5KCR|1|1a|A|482
5KCR|1|1a|C|483

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16