IL_5KCR_162

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

5KCR|1|1a|C|1200, 5KCR|1|1a|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_162 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.0789

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5KCR|1|1a|G|1057
5KCR|1|1a|G|1058
*
5KCR|1|1a|U|1199
5KCR|1|1a|C|1200
5KCR|1|1a|A|1201
5KCR|1|1a|U|1202
5KCR|1|1a|C|1203

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1c

30S ribosomal protein S3

Chain 1j

30S ribosomal protein S10

Chain 1n

30S ribosomal protein S14