IL_5KCR_168
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5KCR|1|1a|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCR_168 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.129
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5KCR|1|1a|U|1247
5KCR|1|1a|A|1248
5KCR|1|1a|C|1249
5KCR|1|1a|A|1250
5KCR|1|1a|A|1251
5KCR|1|1a|A|1252
5KCR|1|1a|G|1253
*
5KCR|1|1a|C|1284
5KCR|1|1a|A|1285
5KCR|1|1a|U|1286
5KCR|1|1a|A|1287
5KCR|1|1a|A|1288
5KCR|1|1a|A|1289
5KCR|1|1a|G|1290
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1g
- 30S ribosomal protein S7
- Chain 1i
- 30S ribosomal protein S9
- Chain 1j
- 30S ribosomal protein S10
- Chain 1n
- 30S ribosomal protein S14
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