IL_5KCR_185

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCR_185 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.041

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5KCR|1|1A|G|1666
5KCR|1|1A|G|1667
5KCR|1|1A|A|1668
5KCR|1|1A|A|1669
5KCR|1|1A|C|1670
5KCR|1|1A|U|1671
5KCR|1|1A|A|1672
5KCR|1|1A|G|1673
5KCR|1|1A|G|1674
*
5KCR|1|1A|C|1990
5KCR|1|1A|U|1991
5KCR|1|1A|G|1992
5KCR|1|1A|U|1993
5KCR|1|1A|C|1994

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1O

50S ribosomal protein L14