IL_5KCS_065

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5KCS|1|1A|A|1801, 5KCS|1|1A|C|1816, 5KCS|1|1A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KCS_065 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1314

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5KCS|1|1A|U|1798
5KCS|1|1A|G|1799
5KCS|1|1A|C|1800
5KCS|1|1A|A|1801
5KCS|1|1A|A|1802
5KCS|1|1A|A|1803
5KCS|1|1A|C|1804
*
5KCS|1|1A|G|1813
5KCS|1|1A|G|1814
5KCS|1|1A|A|1815
5KCS|1|1A|C|1816
5KCS|1|1A|G|1817
5KCS|1|1A|U|1818
5KCS|1|1A|A|1819
5KCS|1|1A|U|1820
5KCS|1|1A|A|1821

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1D

50S ribosomal protein L2

Chain 1a

Small subunit ribosomal RNA; SSU rRNA