IL_5KCS_136
3D structure
- PDB id
- 5KCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAAUCC*GAACUG
- Length
- 14 nucleotides
- Bulged bases
- 5KCS|1|1a|U|632
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KCS_136 not in the Motif Atlas
- Homologous match to IL_5J7L_030
- Geometric discrepancy: 0.1082
- The information below is about IL_5J7L_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_78349.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
5KCS|1|1a|U|605
5KCS|1|1a|G|606
5KCS|1|1a|A|607
5KCS|1|1a|A|608
5KCS|1|1a|A|609
5KCS|1|1a|U|610
5KCS|1|1a|C|611
5KCS|1|1a|C|612
*
5KCS|1|1a|G|628
5KCS|1|1a|A|629
5KCS|1|1a|A|630
5KCS|1|1a|C|631
5KCS|1|1a|U|632
5KCS|1|1a|G|633
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1h
- 30S ribosomal protein S8
- Chain 1p
- 30S ribosomal protein S16
- Chain 1q
- 30S ribosomal protein S17
Coloring options: