IL_5KPS_012

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5KPS|1|27|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_012 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1442

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5KPS|1|27|G|147
5KPS|1|27|G|148
5KPS|1|27|A|149
5KPS|1|27|U|150
5KPS|1|27|A|151
5KPS|1|27|A|152
5KPS|1|27|C|153
*
5KPS|1|27|G|168
5KPS|1|27|C|169
5KPS|1|27|U|170
5KPS|1|27|A|171
5KPS|1|27|A|172
5KPS|1|27|U|173
5KPS|1|27|A|174
5KPS|1|27|C|175

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 25

30S ribosomal protein S20