IL_5KPS_014

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

5KPS|1|27|U|244, 5KPS|1|27|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_014 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.0868

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

5KPS|1|27|G|242
5KPS|1|27|A|243
5KPS|1|27|U|244
5KPS|1|27|U|245
5KPS|1|27|A|246
5KPS|1|27|G|247
*
5KPS|1|27|C|277
5KPS|1|27|G|278
5KPS|1|27|A|279
5KPS|1|27|C|280
5KPS|1|27|G|281
5KPS|1|27|A|282
5KPS|1|27|U|283
5KPS|1|27|C|284

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 22

30S ribosomal protein S17