IL_5KPS_033

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

5KPS|1|27|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_033 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1099

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5KPS|1|27|U|662
5KPS|1|27|A|663
5KPS|1|27|G|664
5KPS|1|27|A|665
5KPS|1|27|G|666
*
5KPS|1|27|U|740
5KPS|1|27|G|741
5KPS|1|27|G|742
5KPS|1|27|A|743

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S6

Chain 20

30S ribosomal protein S15

Chain 23

30S ribosomal protein S18