IL_5KPS_038

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1036

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

5KPS|1|27|G|887
5KPS|1|27|G|888
5KPS|1|27|A|889
5KPS|1|27|G|890
5KPS|1|27|U|891
5KPS|1|27|A|892
5KPS|1|27|C|893
5KPS|1|27|G|894
*
5KPS|1|27|U|905
5KPS|1|27|A|906
5KPS|1|27|A|907
5KPS|1|27|A|908
5KPS|1|27|A|909
5KPS|1|27|C|910

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S12

Chain 28

Large subunit ribosomal RNA; LSU rRNA