IL_5KPS_041
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 5KPS|1|27|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPS_041 not in the Motif Atlas
- Homologous match to IL_4LFB_037
- Geometric discrepancy: 0.248
- The information below is about IL_4LFB_037
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_61370.1
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
5KPS|1|27|G|933
5KPS|1|27|C|934
5KPS|1|27|A|935
*
5KPS|1|27|U|1380
5KPS|1|27|U|1381
5KPS|1|27|C|1382
5KPS|1|27|C|1383
5KPS|1|27|C|1384
Current chains
- Chain 27
- 16S ribosomal RNA
Nearby chains
- Chain 12
- 30S ribosomal protein S7
- Chain 14
- 30S ribosomal protein S9
- Chain 30
- mRNA
- Chain 31
- Transfer RNA; tRNA
- Chain 32
- Transfer RNA; tRNA
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