IL_5KPS_056

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1313

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5KPS|1|27|C|1303
5KPS|1|27|G|1304
5KPS|1|27|G|1305
5KPS|1|27|A|1306
5KPS|1|27|U|1307
5KPS|1|27|U|1308
*
5KPS|1|27|A|1329
5KPS|1|27|U|1330
5KPS|1|27|G|1331
5KPS|1|27|A|1332
5KPS|1|27|A|1333
5KPS|1|27|G|1334

Current chains

Chain 27

16S ribosomal RNA

Nearby chains

Chain 18

30S ribosomal protein S13