IL_5KPS_058
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5KPS_058 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1304
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5KPS|1|27|G|1401
5KPS|1|27|C|1402
5KPS|1|27|C|1403
5KPS|1|27|C|1404
*
5KPS|1|27|G|1497
5KPS|1|27|U|1498
5KPS|1|27|A|1499
5KPS|1|27|A|1500
5KPS|1|27|C|1501
Current chains
- Chain 27
- 16S ribosomal RNA
Nearby chains
- Chain 17
- 30S ribosomal protein S12
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain 30
- mRNA
- Chain 31
- Transfer RNA; tRNA
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