IL_5KPS_081

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5KPS|1|28|G|801, 5KPS|1|28|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_081 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1203

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|G|674
5KPS|1|28|A|675
5KPS|1|28|A|676
5KPS|1|28|A|677
5KPS|1|28|C|678
*
5KPS|1|28|G|799
5KPS|1|28|A|800
5KPS|1|28|G|801
5KPS|1|28|A|802
5KPS|1|28|U|803
5KPS|1|28|A|804
5KPS|1|28|G|805
5KPS|1|28|C|806

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15