IL_5KPS_084

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_084 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1184

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5KPS|1|28|U|703
5KPS|1|28|G|704
5KPS|1|28|A|705
5KPS|1|28|A|706
5KPS|1|28|G|707
*
5KPS|1|28|U|724
5KPS|1|28|G|725
5KPS|1|28|G|726
5KPS|1|28|A|727
5KPS|1|28|G|728

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2