IL_5KPS_105

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCCAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

5KPS|1|28|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_105 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.2017

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

5KPS|1|28|C|1043
5KPS|1|28|C|1044
5KPS|1|28|C|1045
5KPS|1|28|A|1046
5KPS|1|28|G|1047
5KPS|1|28|A|1048
5KPS|1|28|C|1049
5KPS|1|28|A|1050
5KPS|1|28|G|1051
*
5KPS|1|28|U|1108
5KPS|1|28|C|1109
5KPS|1|28|G|1110
5KPS|1|28|A|1111
5KPS|1|28|G|1112

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain F

50S ribosomal protein L6

Chain H

50S ribosomal protein L10