IL_5KPS_141

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5KPS|1|28|A|1938, 5KPS|1|28|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_141 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1571

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5KPS|1|28|C|1934
5KPS|1|28|G|1935
5KPS|1|28|A|1936
5KPS|1|28|A|1937
5KPS|1|28|A|1938
5KPS|1|28|U|1939
5KPS|1|28|U|1940
5KPS|1|28|C|1941
5KPS|1|28|C|1942
5KPS|1|28|U|1943
5KPS|1|28|U|1944
5KPS|1|28|G|1945
*
5KPS|1|28|C|1961
5KPS|1|28|C|1962
5KPS|1|28|U|1963
5KPS|1|28|G|1964

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2