IL_5KPS_167

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

5KPS|1|28|C|2712, 5KPS|1|28|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_167 not in the Motif Atlas

Homologous match to IL_4WF9_103

Geometric discrepancy: 0.1043

The information below is about IL_4WF9_103

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

5KPS|1|28|U|2695
5KPS|1|28|U|2696
*
5KPS|1|28|A|2711
5KPS|1|28|C|2712
5KPS|1|28|U|2713
5KPS|1|28|G|2714

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L17

Chain P

50S ribosomal protein L19