IL_5KPS_168

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

5KPS|1|28|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_168 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.0902

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5KPS|1|28|G|2737
5KPS|1|28|A|2738
5KPS|1|28|U|2739
5KPS|1|28|A|2740
5KPS|1|28|A|2741
5KPS|1|28|G|2742
*
5KPS|1|28|C|2762
5KPS|1|28|G|2763
5KPS|1|28|A|2764
5KPS|1|28|A|2765
5KPS|1|28|A|2766
5KPS|1|28|C|2767

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain F

50S ribosomal protein L6

Chain J

50S ribosomal protein L13