IL_5KPS_181

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_181 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0883

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5KPS|1|28|G|1666
5KPS|1|28|G|1667
5KPS|1|28|A|1668
5KPS|1|28|A|1669
5KPS|1|28|C|1670
5KPS|1|28|U|1671
5KPS|1|28|A|1672
5KPS|1|28|G|1673
5KPS|1|28|G|1674
*
5KPS|1|28|C|1990
5KPS|1|28|U|1991
5KPS|1|28|G|1992
5KPS|1|28|U|1993
5KPS|1|28|C|1994

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain K

50S ribosomal protein L14