IL_5KPS_182

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPS_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1046

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPS|1|28|U|1851
5KPS|1|28|U|1852
5KPS|1|28|A|1853
5KPS|1|28|A|1854
5KPS|1|28|U|1855
5KPS|1|28|U|1856
5KPS|1|28|G|1857
5KPS|1|28|A|1858
5KPS|1|28|U|1859
5KPS|1|28|G|1860
*
5KPS|1|28|U|1882
5KPS|1|28|U|1883
5KPS|1|28|G|1884
5KPS|1|28|A|1885
5KPS|1|28|U|1886
5KPS|1|28|C|1887
5KPS|1|28|G|1888
5KPS|1|28|A|1889
5KPS|1|28|A|1890
5KPS|1|28|G|1891

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 32

Transfer RNA; tRNA