IL_5KPV_078

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_078 not in the Motif Atlas

Geometric match to IL_5J7L_257

Geometric discrepancy: 0.1428

The information below is about IL_5J7L_257

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5KPV|1|27|C|564
5KPV|1|27|C|565
5KPV|1|27|U|566
*
5KPV|1|27|A|575
5KPV|1|27|U|576
5KPV|1|27|G|577

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15

Chain P

50S ribosomal protein L20

Chain Q

50S ribosomal protein L21