IL_5KPV_141

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5KPV|1|27|A|1938, 5KPV|1|27|U|1944, 5KPV|1|27|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPV_141 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1793

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5KPV|1|27|C|1934
5KPV|1|27|G|1935
5KPV|1|27|A|1936
5KPV|1|27|A|1937
5KPV|1|27|A|1938
5KPV|1|27|U|1939
5KPV|1|27|U|1940
5KPV|1|27|C|1941
5KPV|1|27|C|1942
5KPV|1|27|U|1943
5KPV|1|27|U|1944
5KPV|1|27|G|1945
*
5KPV|1|27|C|1961
5KPV|1|27|C|1962
5KPV|1|27|U|1963
5KPV|1|27|G|1964

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA