IL_5KPW_104

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

5KPW|1|27|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_104 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.1093

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

5KPW|1|27|G|1031
5KPW|1|27|A|1032
5KPW|1|27|U|1033
5KPW|1|27|G|1034
*
5KPW|1|27|C|1121
5KPW|1|27|G|1122
5KPW|1|27|C|1123

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 28

5S ribosomal RNA; 5S rRNA

Chain 5

50S ribosomal protein L36

Chain L

50S ribosomal protein L16