IL_5KPW_135

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

5KPW|1|27|A|1801, 5KPW|1|27|C|1816, 5KPW|1|27|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_135 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0959

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

5KPW|1|27|U|1798
5KPW|1|27|G|1799
5KPW|1|27|C|1800
5KPW|1|27|A|1801
5KPW|1|27|A|1802
5KPW|1|27|A|1803
5KPW|1|27|C|1804
*
5KPW|1|27|G|1813
5KPW|1|27|G|1814
5KPW|1|27|A|1815
5KPW|1|27|C|1816
5KPW|1|27|G|1817
5KPW|1|27|U|1818
5KPW|1|27|A|1819
5KPW|1|27|U|1820
5KPW|1|27|A|1821

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2