IL_5KPW_163

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

5KPW|1|27|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_163 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0935

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5KPW|1|27|C|2636
5KPW|1|27|U|2637
5KPW|1|27|G|2638
5KPW|1|27|A|2639
5KPW|1|27|G|2640
*
5KPW|1|27|C|2774
5KPW|1|27|G|2775
5KPW|1|27|A|2776
5KPW|1|27|G|2777
5KPW|1|27|A|2778
5KPW|1|27|U|2779
5KPW|1|27|G|2780
5KPW|1|27|A|2781
5KPW|1|27|G|2782

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain I

50S ribosomal protein L13