IL_5KPW_166

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

5KPW|1|27|U|2689, 5KPW|1|27|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPW_166 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.1013

The information below is about IL_5J7L_348

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

5KPW|1|27|U|2687
5KPW|1|27|G|2688
5KPW|1|27|U|2689
5KPW|1|27|U|2690
5KPW|1|27|C|2691
*
5KPW|1|27|G|2718
5KPW|1|27|G|2719
5KPW|1|27|U|2720
5KPW|1|27|A|2721
5KPW|1|27|G|2722

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain M

50S ribosomal protein L17

Chain O

50S ribosomal protein L19