IL_5KPX_035

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

5KPX|1|26|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.1186

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

5KPX|1|26|U|684
5KPX|1|26|G|685
5KPX|1|26|U|686
5KPX|1|26|A|687
5KPX|1|26|G|688
*
5KPX|1|26|C|699
5KPX|1|26|G|700
5KPX|1|26|U|701
5KPX|1|26|A|702
5KPX|1|26|G|703
5KPX|1|26|A|704
5KPX|1|26|G|705
5KPX|1|26|A|706

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 15

30S ribosomal protein S11

Chain 27

Large subunit ribosomal RNA; LSU rRNA