IL_5KPX_140

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

5KPX|1|27|A|1938, 5KPX|1|27|U|1944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5KPX_140 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1762

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5KPX|1|27|C|1934
5KPX|1|27|G|1935
5KPX|1|27|A|1936
5KPX|1|27|A|1937
5KPX|1|27|A|1938
5KPX|1|27|U|1939
5KPX|1|27|U|1940
5KPX|1|27|C|1941
5KPX|1|27|C|1942
5KPX|1|27|U|1943
5KPX|1|27|U|1944
5KPX|1|27|G|1945
*
5KPX|1|27|C|1961
5KPX|1|27|C|1962
5KPX|1|27|U|1963
5KPX|1|27|G|1964

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain A

50S ribosomal protein L2