IL_5L3P_016

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5L3P|1|A|G|801, 5L3P|1|A|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_016 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1405

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5L3P|1|A|G|674
5L3P|1|A|A|675
5L3P|1|A|A|676
5L3P|1|A|A|677
5L3P|1|A|C|678
*
5L3P|1|A|G|799
5L3P|1|A|A|800
5L3P|1|A|G|801
5L3P|1|A|A|802
5L3P|1|A|U|803
5L3P|1|A|A|804
5L3P|1|A|G|805
5L3P|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L4

Chain P

50S ribosomal protein L15