IL_5L3P_021

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

5L3P|1|A|G|776, 5L3P|1|A|A|788, 5L3P|1|A|A|789

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_021 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.2095

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

5L3P|1|A|G|775
5L3P|1|A|G|776
5L3P|1|A|G|777
*
5L3P|1|A|C|787
5L3P|1|A|A|788
5L3P|1|A|A|789
5L3P|1|A|U|790
5L3P|1|A|C|791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain D

50S ribosomal protein L2

Chain F

50S ribosomal protein L4

Chain W

50S ribosomal protein L22