IL_5L3P_032

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_032 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1897

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

5L3P|1|A|U|1004
5L3P|1|A|C|1005
5L3P|1|A|C|1006
5L3P|1|A|C|1007
5L3P|1|A|A|1008
5L3P|1|A|A|1009
5L3P|1|A|A|1010
5L3P|1|A|G|1011
*
5L3P|1|A|C|1150
5L3P|1|A|A|1151

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

50S ribosomal protein L13

Chain U

50S ribosomal protein L20