IL_5L3P_049

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

5L3P|1|A|U|1554

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_049 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.1068

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

5L3P|1|A|C|1437
5L3P|1|A|U|1438
5L3P|1|A|A|1439
5L3P|1|A|U|1440
*
5L3P|1|A|A|1551
5L3P|1|A|A|1552
5L3P|1|A|A|1553
5L3P|1|A|U|1554
5L3P|1|A|G|1555

Current chains

Chain A

23S ribosomal RNA

Nearby chains