IL_5L3P_116

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5L3P|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_116 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1566

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5L3P|1|a|G|147
5L3P|1|a|G|148
5L3P|1|a|A|149
5L3P|1|a|U|150
5L3P|1|a|A|151
5L3P|1|a|A|152
5L3P|1|a|C|153
*
5L3P|1|a|G|168
5L3P|1|a|C|169
5L3P|1|a|U|170
5L3P|1|a|A|171
5L3P|1|a|A|172
5L3P|1|a|U|173
5L3P|1|a|A|174
5L3P|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20