IL_5L3P_127

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_127 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1174

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5L3P|1|a|G|450
5L3P|1|a|A|451
5L3P|1|a|A|452
5L3P|1|a|G|453
5L3P|1|a|G|454
5L3P|1|a|G|455
*
5L3P|1|a|C|477
5L3P|1|a|A|478
5L3P|1|a|U|479
5L3P|1|a|U|480
5L3P|1|a|G|481
5L3P|1|a|A|482
5L3P|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16