IL_5L3P_168

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCAGUAG*CGAACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_168 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2041

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5L3P|1|A|C|238
5L3P|1|A|C|239
5L3P|1|A|C|240
5L3P|1|A|A|241
5L3P|1|A|G|242
5L3P|1|A|U|243
5L3P|1|A|A|244
5L3P|1|A|G|245
*
5L3P|1|A|C|253
5L3P|1|A|G|254
5L3P|1|A|A|255
5L3P|1|A|A|256
5L3P|1|A|C|257
5L3P|1|A|G|258
5L3P|1|A|G|259

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain P

50S ribosomal protein L15