IL_5L3P_177

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_177 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1627

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5L3P|1|A|U|1851
5L3P|1|A|U|1852
5L3P|1|A|A|1853
5L3P|1|A|A|1854
5L3P|1|A|U|1855
5L3P|1|A|U|1856
5L3P|1|A|G|1857
5L3P|1|A|A|1858
5L3P|1|A|U|1859
5L3P|1|A|G|1860
*
5L3P|1|A|U|1882
5L3P|1|A|U|1883
5L3P|1|A|G|1884
5L3P|1|A|A|1885
5L3P|1|A|U|1886
5L3P|1|A|C|1887
5L3P|1|A|G|1888
5L3P|1|A|A|1889
5L3P|1|A|A|1890
5L3P|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains