IL_5L3P_178

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAGCCU*AUGUUU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5L3P_178 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.292

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5L3P|1|A|G|2100
5L3P|1|A|A|2101
5L3P|1|A|G|2102
5L3P|1|A|C|2103
5L3P|1|A|C|2104
5L3P|1|A|U|2105
*
5L3P|1|A|A|2184
5L3P|1|A|U|2185
5L3P|1|A|G|2186
5L3P|1|A|U|2187
5L3P|1|A|U|2188
5L3P|1|A|U|2189

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L9